Stem-loop ppe-MIR6297b

Accession

MI0021673

Description

Prunus persica ppe-MIR6297b precursor miRNA

Sequence

2341 reads, 378.0 reads per million, 20 experiments

gcgcaaagucacuuugagcgacgaauuaUUUUUCGUCGCGCAAAAUUggucgcgcaagacuuugagcgacGAUGUAUUGUCGUCGCGCAAAGUgauuuugcac
..((((((((((((((.(((((((........(((((((.(((....((((......))))))).))))))).......))))))).))))))))))))))..

Structure

gc              a       auuaUUUU       G   AAUU    gc 
  gcaaagucacuuug gcgacga        UCGUCGC CAA    gguc  g
  |||||||||||||| |||||||        ||||||| |||    ||||   
  cguuuuagUGAAAC CGCUGCU        AGcagcg guu    ucag  c
ca              G       -GUUAUGU       a   ----    aa 

Annotation confidence Low

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG8: 2802745-2802847 [-]

Mature ppe-miR6297b-5p

• Accession: MIMAT0058496
• Description: Prunus persica ppe-miR6297b-5p mature miRNA
• Sequence: 29 - UUUUUCGUCGCGCAAAAUU - 47
• Evidence: experimental ; unknown

Mature ppe-miR6297b-3p

• Accession: MIMAT0027336
• Description: Prunus persica ppe-miR6297b-3p mature miRNA
• Sequence: 71 - GAUGUAUUGUCGUCGCGCAAAGU - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371