Stem-loop sma-mir-10

Accession

MI0021817

Description

Schistosoma mansoni sma-mir-10 precursor miRNA

Literature search

16 open access papers mention sma-mir-10
(33 sentences)

Sequence

81112 reads, 18899.0 reads per million, 33 experiments

ccucaguaugAACCCUGUAGACCCGAGUUUGGaugcagucagaugcAAAUUCGAGUCUAUAAGGAAAaauacuuuggaa
((..(((((...((.(((((((.((((((((.((........)).)))))))).))))))).))....)))))..))..

Structure

--  uc     -gAA  C       C        G  gca 
  cc  aguau    CC UGUAGAC CGAGUUUG au   g
  ||  |||||    || ||||||| |||||||| ||    
  gg  ucaua    GG AUAUCUG GCUUAAAc ua   u
aa  uu     aAAA  A       A        g  gac 

Annotation confidence High

Genome context

4: 33574376-33574454 [+]

Mature sma-miR-10-5p

• Accession: MIMAT0025023
• Description: Schistosoma mansoni sma-miR-10-5p mature miRNA
• Sequence: 11 - AACCCUGUAGACCCGAGUUUGG - 32
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-miR-10-3p

• Accession: MIMAT0025024
• Description: Schistosoma mansoni sma-miR-10-3p mature miRNA
• Sequence: 47 - AAAUUCGAGUCUAUAAGGAAA - 67
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 21640815
   Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
   "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
   "Genomics (2011) 98:96-111


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402