Stem-loop sma-mir-190

Accession

MI0021819

Description

Schistosoma mansoni sma-mir-190 precursor miRNA

Literature search

1 open access papers mention sma-mir-190
(3 sentences)

Sequence

cgauaguagacuagucgaugUGAUAUGUAUGGGUUACUUGGUGucagcggauaacauauuguguucgcuauuaaaacacacCAGUGACCAGACAUAUCCCUaucgcauaguuuagaucauc
.(((..(((((((..(((((.(((((((...(((((((.(((((.((((((((........))))))))........))))))))))))..)))))))..)))))..))))))).)))...

Structure

--c   ag       gu     -U       AUG       U     -------c        aca 
   gau  uagacua  cgaug  GAUAUGU   GGUUACU GGUGu        agcggaua   u
   |||  |||||||  |||||  |||||||   ||||||| |||||        ||||||||    
   cua  auuugau  gcuaU  CUAUACA   CCAGUGA Ccaca        ucgcuugu   a
cua   -g       ac     CC       -GA       -     caaaauua        guu 

Annotation confidence Not enough data

Genome context

Chr_1: 34471102-34471222 [+]

Mature sma-miR-190-5p

• Accession: MIMAT0025027
• Description: Schistosoma mansoni sma-miR-190-5p mature miRNA
• Sequence: 21 - UGAUAUGUAUGGGUUACUUGGUG - 43
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-miR-190-3p

• Accession: MIMAT0025028
• Description: Schistosoma mansoni sma-miR-190-3p mature miRNA
• Sequence: 82 - CAGUGACCAGACAUAUCCCU - 101
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 21640815
   Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
   "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
   "Genomics (2011) 98:96-111


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402