Stem-loop sma-mir-2a

Accession

MI0021820

Description

Schistosoma mansoni sma-mir-2a precursor miRNA

Literature search

12 open access papers mention sma-mir-2a
(33 sentences)

Sequence

56294 reads, 9720.0 reads per million, 33 experiments

accucuugcgccgCAGUCAAUAUUGGCUGAAGGCauugcuuuauugUCACAGCCAGUAUUGAUGAACgguguaaaagg
.(((.((((((((..((((((((((((((..((((.........)))).))))))))))))))...)))))))).)))

Structure

a   c        -CA              AA    uug 
 ccu uugcgccg   GUCAAUAUUGGCUG  GGCa   c
 ||| ||||||||   ||||||||||||||  ||||   u
 gga aauguggC   UAGUUAUGACCGAC  CUgu   u
-   a        AAG              -A    uau 

Annotation confidence High

Genome context

PAR1: 4544050-4544127 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sma-mir-2a

Mature sma-miR-2a-5p

• Accession: MIMAT0025029
• Description: Schistosoma mansoni sma-miR-2a-5p mature miRNA
• Sequence: 14 - CAGUCAAUAUUGGCUGAAGGC - 34
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-miR-2a-3p

• Accession: MIMAT0025030
• Description: Schistosoma mansoni sma-miR-2a-3p mature miRNA
• Sequence: 47 - UCACAGCCAGUAUUGAUGAAC - 67
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 21640815
   Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
   "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
   "Genomics (2011) 98:96-111


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402