Stem-loop sma-mir-2b

Accession

MI0021821

Description

Schistosoma mansoni sma-mir-2b precursor miRNA

Literature search

10 open access papers mention sma-mir-2b
(27 sentences)

Sequence

92193 reads, 11242.0 reads per million, 33 experiments

agguggugcgCGUCUCAAGGGACUGUGAAACaucguaaccauuugUAUCACAGCCCUGCUUGGGACACagccuaccugc
((((((.(((.((((((((((.((((((.(((...........))).))))))))))...)))))).).))))))))..

Structure

--      u  - C      ---    A      A   ucgu 
  aggugg gc g GUCUCA   AGGG CUGUGA ACa    a
  |||||| || | ||||||   |||| |||||| |||    a
  uccauc cg C CAGGGU   UCCC GACACU Ugu    c
cg      -  a A      UCG    -      A   uuac 

Annotation confidence High

Genome context

PAR1: 4544145-4544223 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sma-mir-2b

Mature sma-miR-2b-5p

• Accession: MIMAT0025031
• Description: Schistosoma mansoni sma-miR-2b-5p mature miRNA
• Sequence: 11 - CGUCUCAAGGGACUGUGAAAC - 31
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-miR-2b-3p

• Accession: MIMAT0025032
• Description: Schistosoma mansoni sma-miR-2b-3p mature miRNA
• Sequence: 46 - UAUCACAGCCCUGCUUGGGACAC - 68
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 21640815
   Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
   "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
   "Genomics (2011) 98:96-111


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402