Stem-loop sma-mir-2c

Accession

MI0021822

Description

Schistosoma mansoni sma-mir-2c precursor miRNA

Literature search

13 open access papers mention sma-mir-2c
(33 sentences)

Sequence

3927 reads, 729.0 reads per million, 32 experiments

ggcgcaUCCCUUGUUCGACUGUGAUGUguucgaaguaaacucaUAUCACAGCCGUGCUUAAGGGCUUcgucaaaa
((((...(((((((.((.((((((((((.............)))))))))).)).))..)))))...))))....

Structure

----    caU     --  U  A          uucga 
    ggcg   CCCUU  GU CG CUGUGAUGUg     a
    ||||   |||||  || || ||||||||||     g
    cugc   GGGAA  CG GC GACACUAUac     u
aaaa    UUC     UU  U  C          ucaaa 

Annotation confidence High

Genome context

5: 9680092-9680166 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sma-mir-2c

Mature sma-miR-2c-5p

• Accession: MIMAT0025033
• Description: Schistosoma mansoni sma-miR-2c-5p mature miRNA
• Sequence: 7 - UCCCUUGUUCGACUGUGAUGU - 27
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-miR-2c-3p

• Accession: MIMAT0025034
• Description: Schistosoma mansoni sma-miR-2c-3p mature miRNA
• Sequence: 44 - UAUCACAGCCGUGCUUAAGGGCUU - 67
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 21640815
   Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
   "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
   "Genomics (2011) 98:96-111


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402