Stem-loop sma-mir-2d

Accession

MI0021823

Description

Schistosoma mansoni sma-mir-2d precursor miRNA

Literature search

4 open access papers mention sma-mir-2d
(11 sentences)

Sequence

11985 reads, 1619.0 reads per million, 33 experiments

cgaccaguucGUCAUCCUUGGAUUGUGAUUUUccgaaauaaaauuuuaugaauagaaUAUCACAGUCCUGCUUAGGUGACGaauuucg
(((..(((((((((((...((((((((((.(((....((((....)))).....))).))))))))))......))))))))))))))

Structure

   cc           ---CUU          U   -cgaa    a 
cga  aguucGUCAUC      GGAUUGUGAU UUc     auaa a
|||  |||||||||||      |||||||||| |||     ||||  
gcu  uuaaGCAGUGG      CCUGACACUA aag     uauu u
   --           AUUCGU          U   auaag    u 

Annotation confidence High

Genome context

5: 9679976-9680063 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sma-mir-2d

Mature sma-miR-2d-5p

• Accession: MIMAT0032135
• Description: Schistosoma mansoni sma-miR-2d-5p mature miRNA
• Sequence: 11 - GUCAUCCUUGGAUUGUGAUUUU - 32
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-miR-2d-3p

• Accession: MIMAT0025035
• Description: Schistosoma mansoni sma-miR-2d-3p mature miRNA
• Sequence: 58 - UAUCACAGUCCUGCUUAGGUGACG - 81
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 21640815
   Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
   "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
   "Genomics (2011) 98:96-111


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402