Stem-loop sma-mir-2e

Accession

MI0021824

Description

Schistosoma mansoni sma-mir-2e precursor miRNA

Literature search

4 open access papers mention sma-mir-2e
(11 sentences)

Sequence

gcucuUACCAACUUUGACUGAGUUAUacugcuuuuguaagccuuguaUAUCACAGUCCAAGCUUUGGUaaguuuugguggguu
...(((((((((((.(((((.(.(((((.((((....))))...))))).).))))).)))..))))))))............

Structure

---------gcu        --   U     A U     --u    u 
            cuUACCAA  CUU GACUG G UAUac   gcuu u
            ||||||||  ||| ||||| | |||||   ||||  
            gaaUGGUU  GAA CUGAC C AUaug   cgaa g
uugggugguuuu        UC   C     A U     uuc    u 

Annotation confidence Not enough data

Genome context

Chr_W: 22875945-22876027 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sma-mir-2e

Mature sma-miR-2e-5p

• Accession: MIMAT0025036
• Description: Schistosoma mansoni sma-miR-2e-5p mature miRNA
• Sequence: 6 - UACCAACUUUGACUGAGUUAU - 26
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-miR-2e-3p

• Accession: MIMAT0025037
• Description: Schistosoma mansoni sma-miR-2e-3p mature miRNA
• Sequence: 48 - UAUCACAGUCCAAGCUUUGGU - 68
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 21640815
   Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
   "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
   "Genomics (2011) 98:96-111


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402