Stem-loop sma-mir-61

Accession

MI0021829

Description

Schistosoma mansoni sma-mir-61 precursor miRNA

Literature search

7 open access papers mention sma-mir-61
(15 sentences)

Sequence

170894 reads, 31923.0 reads per million, 33 experiments

gcUGUGGGUCUCUUUCUUGUCCAUgguauaguaguugaagcucacugcuuuagugugcauccucuuuacaucacaUGACUAGAAAGUGCACUCACUUC
...(((((((.((((((.(((.(((..((.((((..((.((.(((((...))))).)).))....))))))..)))))).)))))).).))))))...

Structure

gcU      - U      U   C   gu  a    --uu  a  u     c 
   GUGGGU C CUUUCU GUC AUg  au guag    ga gc cacug  
   |||||| | |||||| ||| |||  || ||||    || || ||||| u
   CACUCA G GAAAGA CAG Uac  ua cauu    cu cg gugau  
CUU      C U      U   -   ac  -    ucuc  a  u     u 

Annotation confidence High

Genome context

1: 84593789-84593886 [+]

Mature sma-miR-61-5p

• Accession: MIMAT0032138
• Description: Schistosoma mansoni sma-miR-61-5p mature miRNA
• Sequence: 3 - UGUGGGUCUCUUUCUUGUCCAU - 24
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-miR-61-3p

• Accession: MIMAT0025042
• Description: Schistosoma mansoni sma-miR-61-3p mature miRNA
• Sequence: 76 - UGACUAGAAAGUGCACUCACUUC - 98
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 21640815
   Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
   "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
   "Genomics (2011) 98:96-111


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402