Stem-loop sma-mir-71b

Accession

MI0021830

Description

Schistosoma mansoni sma-mir-71b precursor miRNA

Literature search

7 open access papers mention sma-mir-71b
(27 sentences)

Sequence

ccguuugccaUGAAAGACUUGAGUAGUGAGACGcuuacagcgugguuuuuucccuucggcgCCUCAUACUGAGUCUUUCCCGgcucacuggc
((((..(((..(((((((((.((((.((((.((((...((...((......))))..)))).)))))))))))))))))..)))..)).)).

Structure

-  -  uu   aU         G    G    A    uac  cgu  uu 
 cc gu  gcc  GAAAGACUU AGUA UGAG CGcu   ag   gg  u
 || ||  |||  ||||||||| |||| |||| ||||   ||   ||   
 gg ca  cgG  CUUUCUGAG UCAU ACUC gcgg   uc   cc  u
c  u  cu   CC         -    -    C    -cu  ---  uu 

Annotation confidence Not enough data

Genome context

Chr_5: 1982759-1982850 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from sma-mir-71b

Mature sma-miR-71b-5p

• Accession: MIMAT0025043
• Description: Schistosoma mansoni sma-miR-71b-5p mature miRNA
• Sequence: 11 - UGAAAGACUUGAGUAGUGAGACG - 33
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-miR-71b-3p

• Accession: MIMAT0025044
• Description: Schistosoma mansoni sma-miR-71b-3p mature miRNA
• Sequence: 62 - CCUCAUACUGAGUCUUUCCCG - 82
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 21640815
   Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
   "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
   "Genomics (2011) 98:96-111


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402