Accession
MI0021970
Description
Populus trichocarpa
ptc-MIR6425a precursor miRNA
Sequence
ggacccaugcauggcgaacaaguugagcuguaggguuaugaugaacaugcuaauuacaagcuaUUGUCUUCCAUGGAAUAGGCAGugauggcauuuguuuuauuuuccugagguggagaaaaacaaauagaccauaacacuguuauUCCAUGGAAGAUAAUGACUCGugguugacacuugaucucuccaguccaguucagauucaagcuagcugcugucu
((((....((.((((.......((((((((...((....(((.((..((.(((((((.((.((((((((((((((((((((.(((((((((((((((((((..(((((......)))))))))))))).).))))..))))))))))))))))))))))))).)).))))))).)).)).)))...))....))))))))......))))))....))))
((((....((.((((.......((((((((...((....(((.((..((.(((((((.((.((((((((((((((((((((.(((((((((((((((((((..(((((......)))))))))))))).).))))..))))))))))))))))))))))))).)).))))))).)).)).)))...))....))))))))......))))))....))))
Structure
ccau a gaacaag -uag uuau g ca c a c G -- - - au ug
ggac gc uggc uugagcug gg gau aa ug uaauuac ag uaUUGUCUUCCAUGGAAUAG CAGug augg c auuuguuuu uuucc a
|||| || |||| |||||||| || ||| || || ||||||| || |||||||||||||||||||| ||||| |||| | ||||||||| |||||
ucug cg aucg gacuugac cc cua uu ac guugguG UC GUAAUAGAAGGUACCUuauu gucac uacc g uaaacaaaa agagg g
ucgu - -aacuua cuga -ucu g -c a C A - aa a a -- ug
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
CM000337.2: 20468178-20468397 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptc-MIR6425a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ptc-miR6425a-5p
| Accession | MIMAT0025190 |
| Description | Populus trichocarpa ptc-miR6425a-5p mature miRNA |
| Sequence | 64 - UUGUCUUCCAUGGAAUAGGCAG - 85 |
| Evidence |
experimental
miRNAseq [1] |
Mature ptc-miR6425a-3p
| Accession | MIMAT0025191 |
| Description | Populus trichocarpa ptc-miR6425a-3p mature miRNA |
| Sequence | 147 - UCCAUGGAAGAUAAUGACUCG - 167 |
| Evidence |
experimental
miRNAseq [1] |
References
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