Stem-loop ptc-MIR6464

Accession

MI0021971

Description

Populus trichocarpa ptc-MIR6464 precursor miRNA

Sequence

agaugauauuuuuuuauuuugaaaauuaUGAUUGCUUGUUGGAUAUUAUacauauuauauaauauguauaauauccaacaagcaaucauaauuucuugcaaagcgaugagaauucacu
...(((.((((((...(((((.((((((((((((((((((((((((((((((((((....))))))))))))))))))))))))))))))))))....)))))....)))))))))..

Structure

aga   u      -uua     ---a                                  a 
   uga auuuuu    uuuug    aaauuaUGAUUGCUUGUUGGAUAUUAUacauauu u
   ||| ||||||    |||||    ||||||||||||||||||||||||||||||||||  
   acu uaagag    gaaac    uuuaauacuaacgaacaaccuauaauauguauaa a
-uc   -      uagc     guuc                                  u 

Annotation confidence Not enough data

Genome context

CM000340.2: 6850844-6850961 [+]

Mature ptc-miR6464

• Accession: MIMAT0025192
• Description: Populus trichocarpa ptc-miR6464 mature miRNA
• Sequence: 29 - UGAUUGCUUGUUGGAUAUUAU - 49
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034