Stem-loop ptc-MIR6466

Accession

MI0021973

Description

Populus trichocarpa ptc-MIR6466 precursor miRNA

Sequence

168 reads, 3.0 reads per million, 9 experiments

ggugcauauauauacaugaaugugccucaugUCUGGUAUGAGCAUUUGAUGAUugauaauuucaauuuguuuacaucuuuuuucugcaauccuaauaccgcguacuuucaaauguaaagaaauugaaauuaucaaucaucaaauguucgUACCAUACGUAAGGCACACUCguauguauaauuguauu
.(((((..((((((.((((.(((((((.((((.(((((((((((((((((((((((((((((((((((.(((((((........(((............))).........))))))).))))))))))))))))))))))))))))))))))).)))).))))))).)))).))))))..))))).

Structure

g     ua      c    a       c    C                                   g       -cuuuuuuc   aaucc 
 gugca  uauaua auga ugugccu augU UGGUAUGAGCAUUUGAUGAUugauaauuucaauuu uuuacau         ugc     u
 |||||  |||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||         |||      
 uaugu  auaugu ugCU ACACGGA UGCA ACCAUgcuuguaaacuacuaacuauuaaaguuaaa aaaugua         gcg     a
u     ua      a    C       A    U                                   g       aacuuucau   ccaua 

Annotation confidence Low

Genome context

CM000340.2: 11447532-11447718 [+]

Mature ptc-miR6466-5p

• Accession: MIMAT0025194
• Description: Populus trichocarpa ptc-miR6466-5p mature miRNA
• Sequence: 32 - UCUGGUAUGAGCAUUUGAUGAU - 53
• Evidence: experimental ; miRNAseq [1]

Mature ptc-miR6466-3p

• Accession: MIMAT0025195
• Description: Populus trichocarpa ptc-miR6466-3p mature miRNA
• Sequence: 150 - UACCAUACGUAAGGCACACUC - 170
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034