Accession
MI0021979
Description
Populus trichocarpa
ptc-MIR6469 precursor miRNA
Sequence
gguauaggccgaguaguauuccaaagaagcuucagauaauagcacguugcauacugagcaucagaagcaauuuacucuugaucccaguucacgaauccucuuuugccagauucacgccacuaaagauucauugggacaugaaugUGGCAGAAAAGGAUUCGUUUAuugagauaagcuuagaguaauuuucuauggcacuggcgcgacgcacucuuaagcaagccacuuucagcauacuacucuuccaaugcc
(((((.((..(((((((((...((((..((((....(((.((..((((((.((.((..(((.(((((....(((((((..(((.((((..(((((((((.((((((((.(((((.(((.(............))).).))))).)))))))).)))))))))..)))).)))......))))))).)))))))).)).))..))))))..)).)))...))))..))))....)))))))))..)).)))))
(((((.((..(((((((((...((((..((((....(((.((..((((((.((.((..(((.(((((....(((((((..(((.((((..(((((((((.((((((((.(((((.(((.(............))).).))))).)))))))).)))))))))..)))).)))......))))))).)))))))).)).))..))))))..)).)))...))))..))))....)))))))))..)).)))))
Structure
a cc -ucc aa caga u ca -a c ag c caau ----ug c uc c g c - a uaaag
gguau gg gaguaguau aaag gcuu uaa ag cguugc ua ug cau agaag uuacucu auc cagu acgaauccu uuuugcca auuca g cc c a
||||| || ||||||||| |||| |||| ||| || |||||| || || ||| ||||| ||||||| ||| |||| ||||||||| |||||||| ||||| | || |
ccgua cc cucaucaua uuuc cgaa auu uc gcagcg gu ac gua ucuuu aaugaga uag guuA UGCUUAGGA AAGACGGU uaagu c gg g u
a uu cgac ac -cga c ac cg c -g - ---u uucgaa a UU A g a a - uuacu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
CM000341.2: 22463492-22463743 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR6469
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ptc-miR6469
| Accession | MIMAT0025202 |
| Description | Populus trichocarpa ptc-miR6469 mature miRNA |
| Sequence | 145 - UGGCAGAAAAGGAUUCGUUUA - 165 |
| Evidence |
experimental
miRNAseq [1] |
References
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