Stem-loop ptc-MIR6457b

Accession

MI0021980

Description

Populus trichocarpa ptc-MIR6457b precursor miRNA MIR6457

Gene
family

RF04102; MIR6457

Sequence

aaugagagaagagucgagcaaaacuaaaagaggaaacuaaucuaucucccugcaaaaugcugccaagcaacaucgucuagaucuuaaauauaagaucaagccgaaguugguuugcugcacuuugcugggagauuagauuaguuuccucuuUUAGUUUGGCAGCCUCUUCUCuuauu
(((((((((((((.(..((.((((((((((((((((((((((((((((((.(((((.(((.((.((.((((.(((.((.(((((((....))))))).)).))).)))).)).)).))).))))).)))))).)))))))))))))))))))))))).)).).)))))))))))))

Structure

             u ga  a                        -      u     a   u  c  g    a   u  a       a 
aaugagagaagag c  gc aaacuaaaagaggaaacuaaucua ucuccc gcaaa ugc gc aa caac ucg cu gaucuua a
||||||||||||| |  || |||||||||||||||||||||||| |||||| ||||| ||| || || |||| ||| || |||||||  
uuauuCUCUUCUC G  CG UUUGAUUuucuccuuugauuagau agaggg cguuu acg cg uu guug agc ga cuagaau u
             C -A  G                        u      u     c   u  u  g    a   c  a       a 

Annotation confidence Not enough data

Genome context

CM000341.2: 24262248-24262423 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ptc-MIR6457b

Mature ptc-miR6457b

• Accession: MIMAT0025203
• Description: Populus trichocarpa ptc-miR6457b mature miRNA
• Sequence: 151 - UUAGUUUGGCAGCCUCUUCUC - 171
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034