Stem-loop ptc-MIR6473

Accession

MI0021987

Description

Populus trichocarpa ptc-MIR6473 precursor miRNA

Sequence

ccauuugaaaauuagucguauauguuccuaaauuuugacgggauuguggauccgaccagguaugacacauuguggugagaaguaccucuaucuucauuuuucauguagaucaucaagugaagguauaguuacuauaucguaccauugugcuucauacuugucagaUCCACAAUCCCAUCAAGACUUuggagcacauaugacagguucucagaaugg
((((((((.((((.(((((((.((((((.((.((((((.(((((((((((((.(((.((((((((..(((.((((((.((((((.((.(((((((((((...(((.....))).))))))))))).)).))))...)).)))))).)))..))))))))))).))))))))))))).)))))).)).)))))).))))))).)))).)))).))))

Structure

    -    a    a       a      u  a      c             c   c        ca   u      a  ---    c  c           uuc   u 
ccau uuga aauu gucguau uguucc aa uuuuga gggauuguggauc gac agguauga  cau guggug ga   agua cu uaucuucauuu   aug a
|||| |||| |||| ||||||| |||||| || |||||| ||||||||||||| ||| ||||||||  ||| |||||| ||   |||| || |||||||||||   ||| g
ggua gacu uugg caguaua acgagg UU AGAACU CCCUAACACCUag cug uucauacu  gug uaccau cu   ucau ga auggaagugaa   uac a
    a    c    a       c      u  C      A             a   -        uc   u      g  aua    u  u           --c   u 

Annotation confidence Not enough data

Genome context

CM000343.2: 4998388-4998603 [+]

Mature ptc-miR6473

• Accession: MIMAT0025212
• Description: Populus trichocarpa ptc-miR6473 mature miRNA
• Sequence: 166 - UCCACAAUCCCAUCAAGACUU - 186
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034