Stem-loop ptc-MIR6425d

Accession

MI0021989

Description

Populus trichocarpa ptc-MIR6425d precursor miRNA MIR6425

Gene
family

RF03237; MIR6425

Sequence

ggacucaugcauggcgaacaaguugagcuguaggguuaugaugaacaugcuaauuacaagcuaUUGUCUUCCAUGGAAUAGGCAGugauggcauuuguuuuauuuuccugagguggagaaaaacaaggagaccauaacacuguuauUCCAUGGAAGAUAAUGACUCGugguugacacuugaucucuccaguccaguucagauucaagcuagcugcugucu
((((.((.((.((((.......((((((((...((....(((.((..((.(((((((.((.((((((((((((((((((((.((((((((((.((((((((..(((((......)))))))))))))..).))))..))))))))))))))))))))))))).)).))))))).)).)).)))...))....))))))))......))))))))..))))

Structure

    -u  u  a    gaacaag        -uag  uuau   g  ca  c       a  c                    G     --    - -a        au     ug 
ggac  ca gc uggc       uugagcug    gg    gau aa  ug uaauuac ag uaUUGUCUUCCAUGGAAUAG CAGug  augg c  uuuguuuu  uuucc  a
||||  || || ||||       ||||||||    ||    ||| ||  || ||||||| || |||||||||||||||||||| |||||  |||| |  ||||||||  |||||   
ucug  gu cg aucg       gacuugac    cc    cua uu  ac guugguG UC GUAAUAGAAGGUACCUuauu gucac  uacc g  gaacaaaa  agagg  g
    uc  -  -    -aacuua        cuga  -ucu   g  -c  a       C  A                    -     aa    a ag        --     ug 

Annotation confidence Not enough data

Genome context

CM000337.2: 20479401-20479620 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptc-MIR6425d

Mature ptc-miR6425d-5p

• Accession: MIMAT0025214
• Description: Populus trichocarpa ptc-miR6425d-5p mature miRNA
• Sequence: 64 - UUGUCUUCCAUGGAAUAGGCAG - 85
• Evidence: experimental ; miRNAseq [1]

Mature ptc-miR6425d-3p

• Accession: MIMAT0025215
• Description: Populus trichocarpa ptc-miR6425d-3p mature miRNA
• Sequence: 147 - UCCAUGGAAGAUAAUGACUCG - 167
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034