Stem-loop ptc-MIR6425e

Accession

MI0021993

Description

Populus trichocarpa ptc-MIR6425e precursor miRNA

Sequence

cugagaauuggacucaugcauggcgaacaaguugagcuguaggguuaugaugaacaugcuaauuacaagccaUUGUCUUCCAUGGAAUAGGCAGugauggcauuuguuuuauuuuccugaguuggagaaaaacaaauagaccauaacacuguuauuccuuggaagauaaugacucgugguugacacuugaucucuccaguccaguucagauucaagcuagcugcugucuguaaauucuuug
..(((((((((((.((.((.((((.......((((((((...((....(((.((..((.(((((((.((.((((((((((((.(((((((.(((((((((((((((((((..(((((......)))))))))))))).).))))..)))))))))))).)))))))))))).)).))))))).)).)).)))...))....))))))))......))))))))..))))...)))))))..

Structure

cu       ---    -u  u  a    gaacaag        -uag  uuau   g  ca  c       a  c            U       G     --    - -         au     ug 
  gagaauu   ggac  ca gc uggc       uugagcug    gg    gau aa  ug uaauuac ag caUUGUCUUCCA GGAAUAG CAGug  augg c auuuguuuu  uuucc  a
  |||||||   ||||  || || ||||       ||||||||    ||    ||| ||  || ||||||| || |||||||||||| ||||||| |||||  |||| | |||||||||  |||||   
  uucuuaa   ucug  gu cg aucg       gacuugac    cc    cua uu  ac guuggug uc guaauagaaggu ccuuauu gucac  uacc g uaaacaaaa  agagg  g
gu       aug    uc  -  -    -aacuua        cuga  -ucu   g  -c  a       c  a            u       -     aa    a a         --     uu 

Annotation confidence Not enough data

Genome context

CM000344.2: 16262332-16262572 [+]

Mature ptc-miR6425e

• Accession: MIMAT0025219
• Description: Populus trichocarpa ptc-miR6425e mature miRNA
• Sequence: 73 - UUGUCUUCCAUGGAAUAGGCAG - 94
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034