Stem-loop ptc-MIR6478

Accession

MI0021994

Description

Populus trichocarpa ptc-MIR6478 precursor miRNA

Sequence

aCCGACCUUAGCUCAGUUGGUGgagcggagggcuguaggucgcugguuggauuccggcaaggucggauuucaauuuuguaauuucuuuucucaccgaccuuaguucagaaguugcauuguuuugucuguugagguggu
(((.((((((((.(((.(((((.(((...((((((.((((((.((((((((.((((((...)))))).)))))).................)).))))))))))))....))).)))))..)))...)))))))))))

Structure

   G        --U   -U     g   -gga      u      c  -----------------      u      a 
aCC ACCUUAGC   CAG  UGGUG agc    gggcug aggucg ug                 guugga uccggc  
||| ||||||||   |||  ||||| |||    |||||| |||||| ||                 |||||| |||||| a
ugg uggaguug   guu  guuac uug    cuugau uccagc ac                 uaacuu aggcug  
   -        ucu   uu     g   aaga      -      c  ucuuuucuuuaauguuu      u      g 

Annotation confidence Not enough data

Genome context

CM000345.2: 1386241-1386378 [-]

Mature ptc-miR6478

• Accession: MIMAT0025220
• Description: Populus trichocarpa ptc-miR6478 mature miRNA
• Sequence: 2 - CCGACCUUAGCUCAGUUGGUG - 22
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034