Stem-loop ptc-MIR6426a

Accession

MI0021995

Description

Populus trichocarpa ptc-MIR6426a precursor miRNA MIR6426

Gene
family

RF03872; MIR6426

Sequence

1196 reads, 20.0 reads per million, 9 experiments

uuuuuucuucuucuucugcaCUUCCAUGUCUCCACUGUUCAcgugaacaGUGGAGACAUGGAAGUGAAGAagaaggagaaugag
....(((((((((((((.((((((((((((((((((((((....)))))))))))))))))))))).)))))))))))))....

Structure

uuuu             g                      A 
    uucuucuucuucu caCUUCCAUGUCUCCACUGUUC c
    ||||||||||||| ||||||||||||||||||||||  
    aagaggaagaAGA GUGAAGGUACAGAGGUGacaag g
gagu             A                      u 

Annotation confidence Low

Genome context

CM000337.2: 22403644-22403727 [-]

Mature ptc-miR6426a-5p

• Accession: MIMAT0055674
• Description: Populus trichocarpa ptc-miR6426a-5p mature miRNA
• Sequence: 21 - CUUCCAUGUCUCCACUGUUCA - 41
• Evidence: experimental ; unknown

Mature ptc-miR6426a-3p

• Accession: MIMAT0025221
• Description: Populus trichocarpa ptc-miR6426a-3p mature miRNA
• Sequence: 50 - GUGGAGACAUGGAAGUGAAGA - 70
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034