Stem-loop ptc-MIR6434

Accession

MI0022009

Description

Populus trichocarpa ptc-MIR6434 precursor miRNA

Sequence

130 reads, 2.0 reads per million, 9 experiments

ggaggaaaaaauguuucauagacucgguCUAUGUAUGCUUGACCAAUCAaguuagucagugcaauugauccaccaucagaguugguuaaugcagggcuuacaugauuugaUUGGUCUGGUUUACAUAGACUaagucuaugccacaguugaacuugc
(.(((......(((..((((((((.((((((((((.(((.(((((((((((((((((..((((.((((((.(((....).)).)))))))))).)))).....))))))))))))).))).)))))))))).))))))))..)))......))).)

Structure

 g   aaaaaa   uu        c          U   U             -----    ag    a      c  - a 
g agg      ugu  cauagacu gguCUAUGUA GCU GACCAAUCAaguu     aguc  ugca uugauc ac c u
| |||      |||  |||||||| |||||||||| ||| |||||||||||||     ||||  |||| |||||| || |  
c uuc      aca  guaucuga UCAGAUACAU UGG CUGGUUaguuuag     ucgg  acgu aauugg ug g c
 g   aaguug   cc        a          U   U             uacau    -g    -      u  a a 

Annotation confidence High

Genome context

CM000346.2: 15332669-15332824 [-]

Mature ptc-miR6434-5p

• Accession: MIMAT0025237
• Description: Populus trichocarpa ptc-miR6434-5p mature miRNA
• Sequence: 29 - CUAUGUAUGCUUGACCAAUCA - 49
• Evidence: experimental ; miRNAseq [1]

Mature ptc-miR6434-3p

• Accession: MIMAT0055678
• Description: Populus trichocarpa ptc-miR6434-3p mature miRNA
• Sequence: 111 - UUGGUCUGGUUUACAUAGACU - 131
• Evidence: experimental ; unknown

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034