Accession
MI0022014
Description
Populus trichocarpa
ptc-MIR6439a precursor miRNA
Sequence
142
reads,
2.0
reads per million, 9 experiments
ucauguaaAGUGAAUGCUGAGUAAGAAGccaaaugaagaagcagaagccaucacuagcgccgcccuaauuaaaugcucaacccgucauuuugaucgcaacgaguuuucaucugcauaugggaagauuuucauggagaagaaugcuguagcauucaguuaagucugauugcaaaccucgugauguauugagcauuuacuuaauaugcugauggugacuUCUGCUUCUUGAUUUGGUGCCUGaaucaacauuaacuuuucauga
(((((.(((((.((((.(((...((..(((((((.((((((((((((.(((((.(((((......(((.(((((((((((..((((((..........((.(((.(((.(((.((..(((((....))))))).))).))).))))).(((.((((......)))).))).......))))))..))))))))))).)))...))))).))))).)))))))))))).)))))))..))...))).)))).))))).)))))
(((((.(((((.((((.(((...((..(((((((.((((((((((((.(((((.(((((......(((.(((((((((((..((((((..........((.(((.(((.(((.((..(((((....))))))).))).))).))))).(((.((((......)))).))).......))))))..))))))))))).)))...))))).))))).)))))))))))).)))))))..))...))).)))).))))).)))))
Structure
u G C GUA AA g c c ccgccc u cc --------------------uuugaucgca g u a g ua a
ucaug aaAGU AAUG UGA AG Gccaaau aagaagcagaag cauca uagcg uaa uaaaugcucaa cgucau ac agu uuc ucu ca uggga g
||||| ||||| |||| ||| || ||||||| |||||||||||| ||||| ||||| ||| ||||||||||| |||||| || ||| ||| ||| || |||||
aguac uuuca uuac acu UC UGGUUUA UUCUUCGUCUuc guggu gucgu auu auuuacgaguu guagug ug ucg aag aga gu acuuu a
u a a aaG CG G a a ---aua c au cuccaaacguuagucugaauugacuuacga - u a g -- u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
CM000347.2: 1164654-1164915 [+]
Database links
Mature ptc-miR6439a-5p
| Accession | MIMAT0025242 |
| Description | Populus trichocarpa ptc-miR6439a-5p mature miRNA |
| Sequence | 9 - AGUGAAUGCUGAGUAAGAAG - 28 |
| Evidence |
experimental
miRNAseq [1] |
Mature ptc-miR6439a-3p
| Accession | MIMAT0055679 |
| Description | Populus trichocarpa ptc-miR6439a-3p mature miRNA |
| Sequence | 218 - UCUGCUUCUUGAUUUGGUGCCUG - 240 |
| Evidence |
experimental
unknown |
References
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