Accession
MI0022021
Description
Populus trichocarpa
ptc-MIR6446 precursor miRNA
Sequence
1565
reads,
25.0
reads per million, 9 experiments
cgcuuucuuccuuuaaaaaauaucaguuccAUCAUGAGGGCUCAGUAAACAACauaauuaacauccuaccaaggagcaagaaggcuauuaggaggucaauuccuuuaccuagcggaaguguuguuuugacaugaguggcauuuaucucgauagucuuggauagaauuaugcugcUUGCUGGGUCCUGAUGAUGGAacuagcauuuuuuaagggaagaaaacg
((.((((((((((((((((((...(((((((((((.(((((((((((((((((((........((((....))))........((((...(((((......)))))...))))....)))))))))......((((((((((((((.(((.....)))))))))....)))))))))))))))))).)))))))))))...)))))))))))))))))).))
((.((((((((((((((((((...(((((((((((.(((((((((((((((((((........((((....))))........((((...(((((......)))))...))))....)))))))))......((((((((((((((.(((.....)))))))))....)))))))))))))))))).)))))))))))...)))))))))))))))))).))
Structure
c auc G -------------------------------------------------- aauuaacauccuaccaaggagcaagaaggc cg uuucuuccuuuaaaaaau aguuccAUCAU AGGGCUCAGU AAACAACau u || |||||||||||||||||| ||||||||||| |||||||||| ||||||||| gc aaagaagggaauuuuuua ucaAGGUAGUA UCCUGGGUCG uuuguugug a a cga G UUcgucguauuaagauagguucugauagcucuauuuacggugaguacagu aaggcgauccauuuccuuaacuggaggauu
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
CM000348.2: 13985267-13985488 [-]
Database links
Mature ptc-miR6446-5p
| Accession | MIMAT0055683 |
| Description | Populus trichocarpa ptc-miR6446-5p mature miRNA |
| Sequence | 31 - AUCAUGAGGGCUCAGUAAACAAC - 53 |
| Evidence |
experimental
unknown |
Mature ptc-miR6446-3p
| Accession | MIMAT0025249 |
| Description | Populus trichocarpa ptc-miR6446-3p mature miRNA |
| Sequence | 175 - UUGCUGGGUCCUGAUGAUGGA - 195 |
| Evidence |
experimental
miRNAseq [1] |
References
|
