Stem-loop ptc-MIR6448

Accession

MI0022023

Description

Populus trichocarpa ptc-MIR6448 precursor miRNA

Sequence

1942 reads, 32.0 reads per million, 9 experiments

uucuagagguaauuaacaucuaacaucugcagacuacuugccuuguuacugcCGUGCCUAUUUUGAAUAUAUAUauucaaaaUAGGCACAGAAUUAACAAGGCaaguauucaguagauguuagauaggaugagcuaaggcuggag
.(((((((.(.(((...(((((((((((((.((.((((((((((((((...(.((((((((((((((((....)))))))))))))))).)...)))))))))))))).)).)))))))))))))..))).).))....))))).

Structure

u     ----  g a   aac             a  c              cug C                U 
 ucuag    ag u auu   aucuaacaucugc ga uacuugccuuguua   c GUGCCUAUUUUGAAUA A
 |||||    || | |||   ||||||||||||| || ||||||||||||||   | ||||||||||||||||  
 agguc    uc a uag   uagauuguagaug cu augaaCGGAACAAU   G CACGGAUaaaacuuaU U
g     ggaa  g g   -ga             a  u              UAA A                A 

Annotation confidence Low

Genome context

CM000350.2: 7160320-7160464 [+]

Mature ptc-miR6448-5p

• Accession: MIMAT0055684
• Description: Populus trichocarpa ptc-miR6448-5p mature miRNA
• Sequence: 53 - CGUGCCUAUUUUGAAUAUAUAU - 74
• Evidence: experimental ; unknown

Mature ptc-miR6448-3p

• Accession: MIMAT0025251
• Description: Populus trichocarpa ptc-miR6448-3p mature miRNA
• Sequence: 83 - UAGGCACAGAAUUAACAAGGC - 103
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034