Stem-loop ptc-MIR6423

Accession

MI0022024

Description

Populus trichocarpa ptc-MIR6423 precursor miRNA

Sequence

uccuuaaagcccucgccuucuccggcaccgCCGCUGUCGCCACUAUCUUCCUccgcuucacuccggucaucgacagcggcgguggagacugguucgggggaggcaguugguuaggcggcggcggcgguggcggcggcggcggagacggagga
(((((....(.(.((((.((.(((.((((((((((((((((((((.((.(((((.((.....((((((.((.((.......)).))))))))...)).))))).)).))))..)))))))))))))))).))).)).))))).)...)))))

Structure

     aaag c u    u  u   g                --    U  U     g  ucacu      a  g  ag 
uccuu    c c cgcc uc ccg caccgCCGCUGUCGCC  ACUA CU CCUcc cu     ccgguc uc ac  c
|||||    | | |||| || ||| ||||||||||||||||  |||| || ||||| ||     |||||| || ||  g
aggag    g g gcgg gg ggc guggcggcggcggcgg  uggu ga ggagg gg     ggucag ag ug  g
     -gca a -    c  c   g                au    u  c     g  --cuu      -  g  gc 

Annotation confidence Not enough data

Genome context

CM000337.2: 9702156-9702307 [+]

Mature ptc-miR6423

• Accession: MIMAT0025252
• Description: Populus trichocarpa ptc-miR6423 mature miRNA
• Sequence: 31 - CCGCUGUCGCCACUAUCUUCCU - 52
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034