Stem-loop ptc-MIR6450a

Accession

MI0022026

Description

Populus trichocarpa ptc-MIR6450a precursor miRNA MIR6450

Gene
family

RF03712; MIR6450

Sequence

aauaaugagucuugcaucaagacccaguucucuuggguccugcaacaggaucuagugcucuuggguccacgucaggacccaauuuucuuggguuCUUUGUCAGGACUCAAGGCUAuuggguuuuagguuuuuaaauauaauuauu
...............(((((((((((((..(((((((((((((((.(((((((((.....((((((((......)))))))).....)))))))))))).))))))))))))..)))))))))).))).................

Structure

--aauaaugagucuugc   -          uc            -   c         ugcuc        ac 
                 auc aagacccagu  ucuuggguccug caa aggaucuag     uugggucc  g
                 ||| ||||||||||  |||||||||||| ||| |||||||||     ||||||||   
                 ugg uuuuggguuA  GGAACUCAGGAC GUU UCuuggguu     aacccagg  u
uuauuaauauaaauuuu   a          UC            U   -         cuuuu        ac 

Annotation confidence Not enough data

Genome context

CM000351.2: 2848979-2849123 [+]

Mature ptc-miR6450a

• Accession: MIMAT0025254
• Description: Populus trichocarpa ptc-miR6450a mature miRNA
• Sequence: 95 - CUUUGUCAGGACUCAAGGCUA - 115
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034