Stem-loop ptc-MIR6450b

Accession

MI0022033

Description

Populus trichocarpa ptc-MIR6450b precursor miRNA MIR6450

Gene
family

RF03712; MIR6450

Sequence

uguuagguccagugucgagacaaauuagccuugggucaugcguuaggacccacgucucaugauccggauacuggaccuaacauaauuggguucagugucggaacccaacauaauugggucCGAACACAGGACUCAAGGCUAaugggucuugaugcauaacccaaca
((((.(((...((((((((((..((((((((((((((.((.(((.(((((((.......((.((((.(((((((((((((.....)))))))))))))))))...)).......))))))).))).)).))))))))))))))..))))))))))...))).))))

Structure

    a   cca          aa              a  c   a       cgucuca  --a    g             c 
uguu ggu   gugucgagac  auuagccuuggguc ug guu ggaccca       ug   uccg auacuggaccuaa a
|||| |||   ||||||||||  |||||||||||||| || ||| |||||||       ||   |||| ||||||||||||| u
acaa cca   cguaguucug  uaAUCGGAACUCAG AC CAA Ccugggu       ac   aggc ugugacuuggguu a
    c   aua          gg              G  A   G       uaauaca  cca    -             a 

Annotation confidence Not enough data

Genome context

CM000353.2: 3927654-3927819 [+]

Mature ptc-miR6450b

• Accession: MIMAT0025261
• Description: Populus trichocarpa ptc-miR6450b mature miRNA
• Sequence: 121 - CGAACACAGGACUCAAGGCUA - 141
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034