Stem-loop ptc-MIR6457a

Accession

MI0022039

Description

Populus trichocarpa ptc-MIR6457a precursor miRNA MIR6457

Gene
family

RF04102; MIR6457

Sequence

188 reads, 3.0 reads per million, 9 experiments

aggaaguaagaguagaguuggaagaaauaagagaagagucgagccaaacuaaaagaggaaacuaauaUAAUCUCUCUGCAGAAUGCUGcaaagcaacaucgucuagaucugaaacauaagaucaagcagaaguuGGUUUGCUGCACUCUGCUGGGagauuagauuaguuuccucuucuaguuugacagccucuucucuuauuuccucaaacuucucccugacuuccu
(((((((.((.(..(((((.((.(((((((((((((((.(..(.(((((((.((((((((((((((.(((((((((.(((((.(((.(((((.((((.((..((.(((((........))))).))..)).)))).))))).))).))))).))))))))).)))))))))))))).))))))).).).))))))))))))))).)).)))))..).)).)))))))

Structure

       a  a ua     g  a               u ga c       a              a         U     A   U     g    a  gu  a     gaa 
aggaagu ag g  gaguu ga gaaauaagagaagag c  g caaacua aagaggaaacuaau UAAUCUCUC GCAGA UGC Gcaaa caac uc  cu gaucu   a
||||||| || |  ||||| || ||||||||||||||| |  | ||||||| |||||||||||||| ||||||||| ||||| ||| ||||| |||| ||  || |||||    
uccuuca uc c  uucaa cu cuuuauucucuucuc g  c guuugau uucuccuuugauua auuagaGGG CGUCU ACG CGUUU Guug ag  ga cuaga   c
       g  c uc     a  c               c -a a       c              g         U     C   U     G    a  ac  a     aua 

Annotation confidence Low

Genome context

CM000338.2: 1273447-1273673 [-]

Mature ptc-miR6457a-5p

• Accession: MIMAT0025267
• Description: Populus trichocarpa ptc-miR6457a-5p mature miRNA
• Sequence: 68 - UAAUCUCUCUGCAGAAUGCUG - 88
• Evidence: experimental ; miRNAseq [1]

Mature ptc-miR6457a-3p

• Accession: MIMAT0055690
• Description: Populus trichocarpa ptc-miR6457a-3p mature miRNA
• Sequence: 135 - GGUUUGCUGCACUCUGCUGGG - 155
• Evidence: experimental ; unknown

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034