Stem-loop ptc-MIR828a

Accession

MI0022049

Description

Populus trichocarpa ptc-MIR828a precursor miRNA

Literature search

3 open access papers mention ptc-MIR828a
(9 sentences)

Sequence

178 reads, 3.0 reads per million, 9 experiments

ucucuuuuuaauguuUCUUGCUCAAAUGAGUAUUCCAacagcaguagccuuaugcaacaagagcauauauuuuuuacuuguaucacuguaauaugauguugcuggaaugcuacuguuUCUGAGAUGCUCAUUUGAGCaaguaauauuagaagauga
....(((((((((((.((((((((((((((((((.((..(((((((((.....((((((....(((((......(((..........)))))))).))))))......)))))))))..)).)))))))))))))))))).)))))))))))....

Structure

ucuc           U                  C  ac         -cuuau      agag     auuuuu   uugu 
    uuuuuaauguu CUUGCUCAAAUGAGUAUU CA  agcaguagc      gcaaca    cauau      uac    a
    ||||||||||| |||||||||||||||||| ||  |||||||||      ||||||    |||||      |||     
    gaagauuauaa gaaCGAGUUUACUCGUAG GU  uugucaucg      cguugu    guaua      aug    u
agua           u                  A  CU         uaaggu      ---a     ------   ucac 

Annotation confidence Medium

Genome context

CM000348.2: 2050399-2050554 [-]

Mature ptc-miR828a-5p

• Accession: MIMAT0025279
• Description: Populus trichocarpa ptc-miR828a-5p mature miRNA
• Sequence: 16 - UCUUGCUCAAAUGAGUAUUCCA - 37
• Evidence: experimental ; miRNAseq [1]

Mature ptc-miR828a-3p

• Accession: MIMAT0055694
• Description: Populus trichocarpa ptc-miR828a-3p mature miRNA
• Sequence: 118 - UCUGAGAUGCUCAUUUGAGC - 137
• Evidence: experimental ; unknown

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034