miRBase entry: prv-mir-LLT6

Stem-loop prv-mir-LLT6


Accession
MI0022077
Description
Pseudorabies virus prv-mir-LLT6 precursor miRNA


Sequence

aggcagggugCGUACCGACCCGCCUACCAGGcaggcuagaagccucacgcugcugcuuggcagcggguggguacccaaccccucc
.((.((((((.(((((.((((((...((((((((((..((....))..))..))))))))..)))))).))))).))..))))))

Structure
a  c    --  C     G      CUA        --  ua  a 
 gg aggg  ug GUACC ACCCGC   CCAGGcag  gc  ga g
 || ||||  || ||||| ||||||   ||||||||  ||  ||  
 cc uccc  ac caugg ugggcg   gguucguc  cg  cu c
-  -    ca  c     g      -ac        gu  ca  c 


Annotation confidence Not enough data
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Genome context
NC_006151.1: 99540-99624 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from prv-mir-LLT6
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prv-miR-LLT6

Accession MIMAT0025309
Description Pseudorabies virus prv-miR-LLT6 mature miRNA
Sequence 11 - CGUACCGACCCGCCUACCAGG - 31
Evidence experimental
Illumina [1], Ion-Torrent [2]

References

  1. PubMed ID: 22292087
    Pseudorabies virus infected porcine epithelial cell line generates a diverse set of host microRNAs and a special cluster of viral microRNAs
    Wu YQ, Chen DJ, He HB, Chen DS, Chen LL, Chen HC, Liu ZF
    PLoS One (2012) 7:e30988

  2. PubMed ID: 24475202
    The role of viral and host microRNAs in the Aujeszky's disease virus during the infection process
    Timoneda O, Núñez-Hernández F, Balcells I, Muñoz M, Castelló A, Vera G, Pérez LJ, Egea R, Mir G, Córdoba S, Rosell R, Segalés J, Tomàs A, Sánchez A, Núñez JI
    PLoS One (2014) 9:e86965