miRBase entry: gga-mir-6544

Stem-loop gga-mir-6544


Accession
MI0022360
Description
Gallus gallus gga-mir-6544 precursor miRNA


Sequence

4872 reads, 5.0 reads per million, 202 experiments
uuccguaagaacuagggcuuguaagauUCAGAAAAGGAUAUGAAUUGUCcuuucaguggugacaAGUUGUAUUUCUUUUCUGACAGUgcgucagcgucaagaagag
..((..........))(((((((....((((((((((((((((.(((((((......)).))))).))))).)))))))))))...))))..)))...........

Structure
uuccguaagaacuagg   --    agau           -     A     -  uu 
                gcu  ugua    UCAGAAAAGGA UAUGA UUGUC cu  c
                |||  ||||    ||||||||||| ||||| ||||| ||   
                cga  gcgU    AGUCUUUUCUU AUGUU Aacag gg  a
-----gagaagaacug   cu    -GAC           U     G     u  ug 


Annotation confidence High
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Genome context
5: 23979202-23979307 [-]

Database links

Mature gga-miR-6544-5p

Accession MIMAT0025591
Description Gallus gallus gga-miR-6544-5p mature miRNA
Sequence 28 - UCAGAAAAGGAUAUGAAUUGUC - 49
Evidence experimental
Illumina [1]

Mature gga-miR-6544-3p

Accession MIMAT0025592
Description Gallus gallus gga-miR-6544-3p mature miRNA
Sequence 65 - AGUUGUAUUUCUUUUCUGACAGU - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227