Stem-loop gga-mir-6546

Accession

MI0022362

Description

Gallus gallus gga-mir-6546 precursor miRNA

Sequence

1217 reads, 1.0 reads per million, 159 experiments

cagugcuggugcugucugugcagacucacagggcauguccugcAGGAGCGCCUCUGAGCUCCCCUcugcuuccaggGGGAGUUCAGCUGUGCUGCUGcagggcucugcccaucugcu
..(((..(((.((((....)))))))))).(((((.(((((((((.(((((..(((((((((((.(((....))))))))))))))..))))).)))))))))..))))).......

Structure

cagugcuggugcugucugugcagacucaca     -u         G     CU           U   c 
                              gggca  guccugcAG AGCGC  CUGAGCUCCCC cug u
                              |||||  ||||||||| |||||  ||||||||||| |||  
                              cccgu  cgggacGUC UCGUG  GACUUGAGGGg gac u
-----------------------ucgucua     cu         G     UC           -   c 

Annotation confidence High

Genome context

7: 35870401-35870517 [-]

Mature gga-miR-6546-5p

• Accession: MIMAT0025595
• Description: Gallus gallus gga-miR-6546-5p mature miRNA
• Sequence: 44 - AGGAGCGCCUCUGAGCUCCCCU - 65
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6546-3p

• Accession: MIMAT0025596
• Description: Gallus gallus gga-miR-6546-3p mature miRNA
• Sequence: 77 - GGGAGUUCAGCUGUGCUGCUG - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227