Stem-loop gga-mir-124c

Accession

MI0022364

Description

Gallus gallus gga-mir-124c precursor miRNA

Literature search

12 open access papers mention gga-mir-124c
(36 sentences)

Sequence

129764 reads, 5 reads per million, 5 experiments

ugccgccuggaggauccgcucuuggCAUUCACCGCGUGCCUUAAUUguaugacauuaaaUCAAGGUCCGCUGUGAACACGGagaggcagagccugggagcg
...(((((..(((.((.((((((.(..(((((.(((.(((((.(((...........))).))))).))).)))))..).)))).)).)).))).)).)))

Structure

ugc   -  gg   a  c  -    g CA     C   U     A   guau 
   cgc cu  agg uc gc ucuu g  UUCAC GCG GCCUU AUU    g
   ||| ||  ||| || || |||| |  ||||| ||| ||||| |||    a
   gcg gg  ucc ag cg agaG C  AAGUG CGC UGGAA Uaa    c
---   a  -g   g  a  g    G AC     U   C     C   auua 

Annotation confidence Not enough data

Genome context

chr2: 114701957-114702057 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-124c

Mature gga-miR-124c-5p

• Accession: MIMAT0025599
• Description: Gallus gallus gga-miR-124c-5p mature miRNA
• Sequence: 26 - CAUUCACCGCGUGCCUUAAUU - 46
• Evidence: experimental ; Illumina [1]

Mature gga-miR-124c-3p

• Accession: MIMAT0025600
• Description: Gallus gallus gga-miR-124c-3p mature miRNA
• Sequence: 60 - UCAAGGUCCGCUGUGAACACGG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227