Stem-loop gga-mir-6548

Accession

MI0022365

Description

Gallus gallus gga-mir-6548 precursor miRNA

Literature search

3 open access papers mention gga-mir-6548
(5 sentences)

Sequence

4022 reads, 13.0 reads per million, 178 experiments

agcagugcauuuuuugccagcgaugAACAACAGCUGCGUGCCAUGCCUGuaaauccauaccagCAGAGGUGCCCCGCUGUUGCUGUcaccacugcugaaacgcacca
....((((.((((..((.((.(.(((.(((((((.(.(((((.(((..(((......)))..)))..))))).).)))))))...))).).)))).)))).))))..

Structure

agca    a    uu  c  c a   --A       U C     -A   CU   aa 
    gugc uuuu  gc ag g ugA   CAACAGC G GUGCC  UGC  Gua  u
    |||| ||||  || || | |||   ||||||| | |||||  |||  |||   
    cacg aaag  cg uc c acU   GUUGUCG C CGUGG  ACg  cau  c
--ac    c    -u  -  a c   GUC       C C     AG   ac   ac 

Annotation confidence Medium

Genome context

14: 7297814-7297920 [-]

Mature gga-miR-6548-5p

• Accession: MIMAT0025601
• Description: Gallus gallus gga-miR-6548-5p mature miRNA
• Sequence: 26 - AACAACAGCUGCGUGCCAUGCCUG - 49
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6548-3p

• Accession: MIMAT0025602
• Description: Gallus gallus gga-miR-6548-3p mature miRNA
• Sequence: 64 - CAGAGGUGCCCCGCUGUUGCUGU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227