Stem-loop gga-mir-6553

Accession

MI0022371

Description

Gallus gallus gga-mir-6553 precursor miRNA

Literature search

1 open access papers mention gga-mir-6553
(1 sentences)

Sequence

1589 reads, 3.0 reads per million, 168 experiments

ucugaggcuggcggagcgugcCAGGAGCAGCCCUGUGAUAGCUguuugcugcuaaccugcAACACUACCCUGAGCUGCUCCUggcuccaucccacgucaa
..(((.(.(((.((.(.(.((((((((((((.(.(.(.(((.((((.((.........))))))))).)).).)))))))))))).)).)))))).))).

Structure

uc   g c   c  a c u            C U U A   C    u  ugc 
  uga g ugg gg g g gcCAGGAGCAGC C G G UAG Uguu gc   u
  ||| | ||| || | | |||||||||||| | | | ||| |||| ||   a
  acu c acc cu c c cggUCCUCGUCG G C C AUC ACAA cg   a
-a   g -   -  a - u            A U - C   -    -  ucc 

Annotation confidence Medium

Genome context

1: 76850134-76850234 [-]

Mature gga-miR-6553-5p

• Accession: MIMAT0025613
• Description: Gallus gallus gga-miR-6553-5p mature miRNA
• Sequence: 22 - CAGGAGCAGCCCUGUGAUAGCU - 43
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6553-3p

• Accession: MIMAT0025614
• Description: Gallus gallus gga-miR-6553-3p mature miRNA
• Sequence: 61 - AACACUACCCUGAGCUGCUCCU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227