Stem-loop gga-mir-6566

Accession

MI0022383

Description

Gallus gallus gga-mir-6566 precursor miRNA

Sequence

930 reads, 1.0 reads per million, 165 experiments

gagccgucuuuguccgagaagcgguUGAGGCCCGAUGUGUCAUUCCUGgauuuucucugucaucCAGCAGGCCAUGGGGUCGCagcugcuccggacguucugca
..((.(....((((((.((.(((((((.(((((.(((.(((....((((((..........))))))..)))))).))))).)))))))))))))))..).)).

Structure

ga  c ucuu      a  a       A     G   U   AUUC      uuuc 
  gc g    uguccg ga gcgguUG GGCCC AUG GUC    CUGgau    u
  || |    |||||| || ||||||| ||||| ||| |||    ||||||     
  cg c    gcaggc cu cgucgaC CUGGG UAC CGG    GACcua    c
-a  u --uu      -  -       G     G   -   --AC      cugu 

Annotation confidence Medium

Genome context

16: 1567350-1567453 [-]

Mature gga-miR-6566-5p

• Accession: MIMAT0025637
• Description: Gallus gallus gga-miR-6566-5p mature miRNA
• Sequence: 26 - UGAGGCCCGAUGUGUCAUUCCUG - 48
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6566-3p

• Accession: MIMAT0025638
• Description: Gallus gallus gga-miR-6566-3p mature miRNA
• Sequence: 65 - CAGCAGGCCAUGGGGUCGC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227