Stem-loop gga-mir-3594

Accession

MI0022385

Description

Gallus gallus gga-mir-3594 precursor miRNA

Sequence

24 reads, 1 reads per million, 3 experiments

ucccacacagcggcggugcccauggaGCACAGCCCAUGUCAGAGCAGUGaccccagcgcuccaucUCUGCAUCGCUGGGCUGUGUCCcuuuggcccccccuauccca
........((.((.((.(((...((.((((((((((((.(((((.((((.......))))....)))))))....)))))))))).))...))))).))))......

Structure

ucccacac  c  c  u   cau  a          ----  U     ---C    ac 
        ag gg gg gcc   gg GCACAGCCCA    UG CAGAG    AGUG  c
        || || || |||   || ||||||||||    || |||||    ||||  c
        uc cc cc cgg   cC UGUGUCGGGU    AC GUCUc    ucgc  c
--acccua  -  c  -   uuu  C          CGCU  -     uacc    ga 

Annotation confidence Not enough data

Genome context

AADN04001051.1: 3028-3134 [+]

Mature gga-miR-3594-5p

• Accession: MIMAT0025641
• Description: Gallus gallus gga-miR-3594-5p mature miRNA
• Sequence: 27 - GCACAGCCCAUGUCAGAGCAGUG - 49
• Evidence: experimental ; Illumina [1]

Mature gga-miR-3594-3p

• Accession: MIMAT0025642
• Description: Gallus gallus gga-miR-3594-3p mature miRNA
• Sequence: 66 - UCUGCAUCGCUGGGCUGUGUCC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227