Stem-loop gga-mir-6568

Accession

MI0022386

Description

Gallus gallus gga-mir-6568 precursor miRNA

Literature search

1 open access papers mention gga-mir-6568
(1 sentences)

Sequence

405 reads, 1.0 reads per million, 100 experiments

ccggcugcccgcccaccccGCGGCCGCCAUCUUGCUUGCGGccggcuacccACAACCAAGAUGGCGCCCGGGCgguuggcggugccggcaccacccca
(((((...(((((.(((((.(((.((((((((((.(((.((........)).))).)))))))))).))))).))).))))).)))))..........

Structure

----------     ugc     c   -  G   C          C   C  ccg 
          ccggc   ccgcc acc cc CGG CGCCAUCUUG UUG GG   g
          |||||   ||||| ||| || ||| |||||||||| ||| ||    
          ggccg   ggcgg ugg GG GCC GCGGUAGAAC AAC cc   c
accccaccac     --u     u   C  -   C          C   A  cau 

Annotation confidence High

Genome context

3: 54888171-54888268 [+]

Mature gga-miR-6568-5p

• Accession: MIMAT0025643
• Description: Gallus gallus gga-miR-6568-5p mature miRNA
• Sequence: 20 - GCGGCCGCCAUCUUGCUUGCGG - 41
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6568-3p

• Accession: MIMAT0025644
• Description: Gallus gallus gga-miR-6568-3p mature miRNA
• Sequence: 52 - ACAACCAAGAUGGCGCCCGGGC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227