Stem-loop gga-mir-6573

Accession

MI0022391

Description

Gallus gallus gga-mir-6573 precursor miRNA

Sequence

12 reads, 1 reads per million, 3 experiments

cugugcugugugggacuguUGGAGAAGUGAGGGGCUCUCUGugccguggaaaugcggugagcucuccaucGGAGGCACUCUGACUUCUCGGAcagggcugcacuggugguuaaugcuuu
....(((((((((..(((((.(((((((.((((((.(((((....(((((...((.....))..)))))))))))).)))).))))))).)))))..)))))).)))............

Structure

--------cugu   -      ga     G       G    -  U     ugcc     aau  g 
            gcu gugugg  cuguU GAGAAGU AGGG GC CUCUG    gugga   gc g
            ||| ||||||  ||||| ||||||| |||| || |||||    |||||   || u
            ugg cacguc  gacAG CUCUUCA UCUC CG GAGGc    uaccu   cg g
uuucguaauugg   u      gg     G       G    A  -     ----     -cu  a 

Annotation confidence Not enough data

Genome context

chr27: 1690903-1691021 [+]

Mature gga-miR-6573-5p

• Accession: MIMAT0025653
• Description: Gallus gallus gga-miR-6573-5p mature miRNA
• Sequence: 20 - UGGAGAAGUGAGGGGCUCUCUG - 41
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6573-3p

• Accession: MIMAT0025654
• Description: Gallus gallus gga-miR-6573-3p mature miRNA
• Sequence: 71 - GGAGGCACUCUGACUUCUCGGA - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227