miRBase entry: gga-mir-365b

Stem-loop gga-mir-365b


Accession
MI0022403
Description
Gallus gallus gga-mir-365b precursor miRNA

Literature search
5 open access papers mention gga-mir-365b
(16 sentences)

Sequence

697 reads, 1 reads per million, 5 experiments
cacagaagaauacugcaagagcaauaAGGAUUUUUAGGGGCAUUAUGAuaguguaauggaaacacaucugcccccaaaagucccucauuuucccugcgguaaagagccau
..........(((((((.(((......((((((((.((((((....(((.((((.......))))))))))))).))))))))......)))..))))))).........

Structure
cacagaagaa       -a   caauaA        A      UUAU   a    aa 
          uacugca  gag      GGAUUUUU GGGGCA    GAu gugu  u
          |||||||  |||      |||||||| ||||||    ||| ||||  g
          auggcgu  cuu      ccugaaaa ccccgu    cua caca  g
-uaccgagaa       cc   uuacuc        c      ----   -    aa 


Annotation confidence Not enough data
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Genome context
chr14: 769102-769211 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from gga-mir-365b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-365b-5p

Accession MIMAT0025674
Description Gallus gallus gga-miR-365b-5p mature miRNA
Sequence 27 - AGGAUUUUUAGGGGCAUUAUGA - 48
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227