Stem-loop gga-mir-6587

Accession

MI0022407

Description

Gallus gallus gga-mir-6587 precursor miRNA

Sequence

acgagcuccgaggcacugccccaguUCUCCAGCGCAAACCUCACGCAGgcggagcuuggugagccccUGCUGGAAGUGGUGCUGGAGGCUggagaccugcuauacuuuc
...........((((...(.(((((.(((((((((..((.((..(((((.((..(.....)..)))))))..)).)).)))))))))))))).)...))))........

Structure

acgagcuccga    cug c     U         AA  C  AC     c  ag u 
           ggca   c ccagu CUCCAGCGC  AC UC  GCAGg gg  c u
           ||||   | ||||| |||||||||  || ||  ||||| ||  | g
           ucgu   g ggUCG GAGGUCGUG  UG AG  CGUcc cc  g g
---cuuucaua    cca a     -         -G  A  GU     -  ga u 

Annotation confidence Not enough data

Genome context

chr5: 26193022-26193130 [-]

Mature gga-miR-6587-5p

• Accession: MIMAT0025678
• Description: Gallus gallus gga-miR-6587-5p mature miRNA
• Sequence: 26 - UCUCCAGCGCAAACCUCACGCAG - 48
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6587-3p

• Accession: MIMAT0025679
• Description: Gallus gallus gga-miR-6587-3p mature miRNA
• Sequence: 68 - UGCUGGAAGUGGUGCUGGAGGCU - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227