Stem-loop gga-mir-6590

Accession

MI0022410

Description

Gallus gallus gga-mir-6590 precursor miRNA

Sequence

31 reads, 1 reads per million, 2 experiments

uauguuucccuacaaguaguuuaaauaUGGGAUCAGGUGCUGAAAUAAGAcuacuucuuuauuUUACUUCUGUUCCUGAUCAUCAgcuggcugcagaaacagca
..((((((.......((((((......((((((((((.((.(((.(((((...........))))).))).)).))))))).)))...)))))).))))))...

Structure

-ua      ccuacaa      uaaaua   -       U  U   A     cuac 
   uguuuc       guaguu      UGG GAUCAGG GC GAA UAAGA    u
   ||||||       ||||||      ||| ||||||| || ||| |||||    u
   acaaag       cgucgg      ACU CUAGUCC UG CUU AUUuu    c
acg      ------a      ---ucg   A       U  U   C     auuu 

Annotation confidence Not enough data

Genome context

chr5: 46491259-46491362 [-]

Mature gga-miR-6590-5p

• Accession: MIMAT0025682
• Description: Gallus gallus gga-miR-6590-5p mature miRNA
• Sequence: 28 - UGGGAUCAGGUGCUGAAAUAAGA - 50
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6590-3p

• Accession: MIMAT0025683
• Description: Gallus gallus gga-miR-6590-3p mature miRNA
• Sequence: 64 - UUACUUCUGUUCCUGAUCAUCA - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227