Stem-loop gga-mir-6592

Accession

MI0022412

Description

Gallus gallus gga-mir-6592 precursor miRNA

Sequence

392 reads, 1.0 reads per million, 125 experiments

gaggagcgccugagccgcggcgacgaggCCGUCAGCCUGGAGCAGUUCUGCgaggugcuggagAGCGUCUCCCGCCUGACGGCCgggucccgcggggagagcgaggaggu
......(((((...((((((.(((..(((((((((.(.((((..(((((.((......)).)))))..)))).).)))))))))..)))))))))..)).))).......

Structure

-gaggag   -  gag      c   ga         C U    CA     G  ag 
       cgc cu   ccgcgg gac  ggCCGUCAG C GGAG  GUUCU Cg  g
       ||| ||   |||||| |||  ||||||||| | ||||  ||||| ||   
       gcg ga   ggcgcc cug  CCGGCAGUC G CCUC  CGAga gu  u
uggagga   a  -gg      -   gg         C C    UG     g  cg 

Annotation confidence Medium

Genome context

19: 3694080-3694189 [+]

Mature gga-miR-6592-5p

• Accession: MIMAT0051289
• Description: Gallus gallus gga-miR-6592-5p mature miRNA
• Sequence: 29 - CCGUCAGCCUGGAGCAGUUCUGC - 51
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6592-3p

• Accession: MIMAT0025685
• Description: Gallus gallus gga-miR-6592-3p mature miRNA
• Sequence: 64 - AGCGUCUCCCGCCUGACGGCC - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227