Stem-loop gga-mir-6593

Accession

MI0022413

Description

Gallus gallus gga-mir-6593 precursor miRNA

Sequence

174 reads, 22.0 reads per million, 56 experiments

cgggcgguGCGGUGCUGUGGGUGCUGggagggcucugugcggcucugugcggcucugugcggcucugggcCCACCCGAGCUCUGUCCCUGCAGaaauauuacccgccggacuucgau
.(..(((((.((((.(((...(((.((((((((((.(((.(((((.(.((.((.....)).)).).))))))))..))))))..)))).)))...))).)))))))))..)......

Structure

-----c gg     C    C   GGG   U    --      -u   c     u u  g  u 
      g  cgguG GGUG UGU   UGC Ggga  gggcuc  gug ggcuc g gc gc c
      |  ||||| |||| |||   ||| ||||  ||||||  ||| ||||| | || || u
      c  gccgc ccau aua   ACG CCCU  CUCGAG  CAC Ccggg c cg cg g
uagcuu ag     -    u   aaG   U    GU      CC   -     u u  g  u 

Annotation confidence Medium

Genome context

chr28: 1402699-1402815 [-]

Mature gga-miR-6593-5p

• Accession: MIMAT0025686
• Description: Gallus gallus gga-miR-6593-5p mature miRNA
• Sequence: 9 - GCGGUGCUGUGGGUGCUG - 26
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6593-3p

• Accession: MIMAT0025687
• Description: Gallus gallus gga-miR-6593-3p mature miRNA
• Sequence: 71 - CCACCCGAGCUCUGUCCCUGCAG - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227