Stem-loop gga-mir-6593

Accession

MI0022413

Description

Gallus gallus gga-mir-6593 precursor miRNA

Sequence

7 reads, 1 reads per million, 4 experiments

cgggcggugcggugcugugggUGCUGGGAGGGCUCUGUGCGGCUcugugcggcucugugcggcucugggcccaccCGAGCUCUGUCCCUGCAGaaauauuacccgccggacuucgau
.(..(((((.((((.(((...(((.((((((((((.(((.(((((.(.((.((.....)).)).).))))))))..))))))..)))).)))...))).)))))))))..)......

Structure

-----c gg     c    c   ggg   U    --      -U   C     u u  g  u 
      g  cggug ggug ugu   UGC GGGA  GGGCUC  GUG GGCUc g gc gc c
      |  ||||| |||| |||   ||| ||||  ||||||  ||| ||||| | || || u
      c  gccgc ccau aua   ACG CCCU  CUCGAG  cac ccggg c cg cg g
uagcuu ag     -    u   aaG   U    GU      Cc   -     u u  g  u 

Annotation confidence Not enough data

Genome context

chr28: 1402699-1402815 [-]

Mature gga-miR-6593-5p

• Accession: MIMAT0025686
• Description: Gallus gallus gga-miR-6593-5p mature miRNA
• Sequence: 22 - UGCUGGGAGGGCUCUGUGCGGCU - 44
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6593-3p

• Accession: MIMAT0025687
• Description: Gallus gallus gga-miR-6593-3p mature miRNA
• Sequence: 76 - CGAGCUCUGUCCCUGCAG - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227