Stem-loop gga-mir-6594

Accession

MI0022414

Description

Gallus gallus gga-mir-6594 precursor miRNA

Sequence

708 reads, 1.0 reads per million, 151 experiments

ucugcuuugcaccacaggguUGGGGGUGGCGUGAGUUGUGGCugggcuuuggugcccacucUCAGCUCAUGUCAUCCCACAGggugaugcacaggaggggcacuaugggg
(((.((.((((.(((...((..((((((((((((((((.((.(((((......))))).)).))))))))))))))))))...))).)))).)).)))............

Structure

------------   g  u    c   agg  UG                U  C     uu 
            ucu cu ugca cac   gu  GGGGUGGCGUGAGUUG GG ugggc  u
            ||| || |||| |||   ||  |||||||||||||||| || |||||   
            gga ga acgu gug   CA  CCCUACUGUACUCGAC cu acccg  g
gggguaucacgg   g  c    a   gGA  --                U  c     ug 

Annotation confidence High

Genome context

4: 553063-553172 [+]

Mature gga-miR-6594-5p

• Accession: MIMAT0025688
• Description: Gallus gallus gga-miR-6594-5p mature miRNA
• Sequence: 21 - UGGGGGUGGCGUGAGUUGUGGC - 42
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6594-3p

• Accession: MIMAT0051290
• Description: Gallus gallus gga-miR-6594-3p mature miRNA
• Sequence: 62 - UCAGCUCAUGUCAUCCCACAG - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227