miRBase entry: gga-mir-6596

Stem-loop gga-mir-6596


Accession
MI0022416
Description
Gallus gallus gga-mir-6596 precursor miRNA


Sequence

2 reads, 0 reads per million, 2 experiments
cccucagggcgggggcgggacgaggGCCGAGCCCGGGCCUUCCCgcucggcucCGGAGCUCGGACGGCGUCCCGAagcacccuggcacguuaaa
...((((((.(....(((((((..(.(((((((((((((.........))).)))).)))))).)..)))))))...).)))))).........

Structure
------ccc      c gggg       ag G      -    -   UUC 
         ucaggg g    cgggacg  g CCGAGC CCGG GCC   C
         |||||| |    |||||||  | |||||| |||| |||   C
         gguccc c    GCCCUGC  C GGCUCG GGCc cgg   g
aaauugcac      a -gaA       GG A      A    u   cuc 


Annotation confidence Not enough data
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Genome context
chr10: 10770945-10771038 [-]

Database links

Mature gga-miR-6596-5p

Accession MIMAT0025690
Description Gallus gallus gga-miR-6596-5p mature miRNA
Sequence 26 - GCCGAGCCCGGGCCUUCCC - 44
Evidence experimental
Illumina [1]

Mature gga-miR-6596-3p

Accession MIMAT0025691
Description Gallus gallus gga-miR-6596-3p mature miRNA
Sequence 54 - CGGAGCUCGGACGGCGUCCCGA - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227