miRBase entry: gga-mir-6601

Stem-loop gga-mir-6601


Accession
MI0022420
Description
Gallus gallus gga-mir-6601 precursor miRNA


Sequence

1 reads, 1 reads per million, 1 experiments
ucccacauaggcuguuccugcuggcugcccagugccaggucucaucccuuugggaucaggGAUGUCUGUGGCUCUGGGCAGaggacaugggaggugcuccuucaggacau
(((......((((.((((((((..((((((((.((((.....(((((((........)))))))....)))).)))))))).)).)).)))).).)))......)))...

Structure
---   cacaua   - g    -  -  gg        u    ggucu       uug 
   ucc      ggc u uucc ug cu  cugcccag gcca     caucccu   g
   |||      ||| | |||| || ||  |||||||| ||||     |||||||    
   agg      ucg g aggg ac gg  GACGGGUC CGGU     GUAGgga   g
uac   acuucc   u g    u  a  -a        U    -GUCU       cua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 23912031-23912140 [+]

Database links

Mature gga-miR-6601-3p

Accession MIMAT0025695
Description Gallus gallus gga-miR-6601-3p mature miRNA
Sequence 61 - GAUGUCUGUGGCUCUGGGCAG - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227