miRBase entry: gga-mir-6609

Stem-loop gga-mir-6609


Accession
MI0022428
Description
Gallus gallus gga-mir-6609 precursor miRNA


Sequence

6 reads, 0 reads per million, 3 experiments
acagaaucugcaucguuguugccagagccaggugccuggugccuccucaccgaggcugaucACAGCCCCUGUGCUCUGACCGCAuugcugcagagccaaccugcugccuu
...(..((((((.((.(((.(.((((((((((.((.(((((((((......)))))..))))..)).)))).)))))).).))).)).))))))..).............

Structure
----------aca aa      u  u   u c      -    u  -c    --     cu 
             g  ucugca cg ugu g cagagc cagg gc  uggu  gccuc  c
             |  |||||| || ||| | |||||| |||| ||  ||||  |||||   
             c  agacgu gu ACG C GUCUCG GUCC CG  Acua  cggag  a
uuccgucguccaa cg      c  u   C A      U    C  AC    gu     cc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 79931571-79931680 [+]

Database links

Mature gga-miR-6609-3p

Accession MIMAT0025704
Description Gallus gallus gga-miR-6609-3p mature miRNA
Sequence 62 - ACAGCCCCUGUGCUCUGACCGCA - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227