Stem-loop gga-mir-6615

Accession

MI0022434

Description

Gallus gallus gga-mir-6615 precursor miRNA

Literature search

3 open access papers mention gga-mir-6615
(6 sentences)

Sequence

14771 reads, 11.0 reads per million, 204 experiments

ccugaauuccagacaagacacuggggcUUGGGGACACCAUCAGAACAGCCacagcugugcuggauucugUGGCACUGAUGUGUUCUCCACAgguccucgugcggacagagc
.(((...(((......(.(((.(((((((((((((((.(((((....(((((((..((.....)).))))))).))))))))))))...)))))))).))))))))))...

Structure

--c   aau   agacaa a   u        ---       C     AACA       cu  g 
   cug   ucc      g cac ggggcUUG   GGGACAC AUCAG    GCCacag  gu c
   |||   |||      | ||| ||||||||   ||||||| |||||    |||||||  || u
   gac   agg      c gug uccuggAC   UCUUGUG UAGUC    CGGUguc  ua g
cga   ---   ------ -   c        ACC       -     ---A       -u  g 

Annotation confidence Medium

Genome context

28: 2189525-2189635 [-]

Mature gga-miR-6615-5p

• Accession: MIMAT0025710
• Description: Gallus gallus gga-miR-6615-5p mature miRNA
• Sequence: 28 - UUGGGGACACCAUCAGAACAGCC - 50
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6615-3p

• Accession: MIMAT0025711
• Description: Gallus gallus gga-miR-6615-3p mature miRNA
• Sequence: 70 - UGGCACUGAUGUGUUCUCCACA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227