miRBase entry: gga-mir-6621

Stem-loop gga-mir-6621


Accession
MI0022441
Description
Gallus gallus gga-mir-6621 precursor miRNA


Sequence

250 reads, 1.0 reads per million, 75 experiments
ucaccacauagguuaugagCACAGGGAUUACAGGGCUCUGAggacucugcagagcagcauucAGUGUCCCUGUUCUCCUUGCAGaguggcggcaggcaaguggggcaagg
...((((....(((((.....((((((..(((((((.(((((....((((...))))..))))).).))))))..))))))....))))).........)))).......

Structure
----uca    -----auag     gagCA      UU      - U     gacu    a 
       ccac         guuau     CAGGGA  ACAGGG C CUGAg    cugc  
       ||||         |||||     ||||||  |||||| | |||||    |||| g
       ggug         cggug     GUUCCU  UGUCCC G GAcuu    gacg  
ggaacgg    aacggacgg     -aGAC      CU      U U     --ac    a 


Annotation confidence High
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Genome context
1: 3253111-3253220 [+]

Database links

Mature gga-miR-6621-5p

Accession MIMAT0025718
Description Gallus gallus gga-miR-6621-5p mature miRNA
Sequence 20 - CACAGGGAUUACAGGGCUCUGA - 41
Evidence experimental
Illumina [1]

Mature gga-miR-6621-3p

Accession MIMAT0051295
Description Gallus gallus gga-miR-6621-3p mature miRNA
Sequence 63 - AGUGUCCCUGUUCUCCUUGCAG - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227